From 92ede3712e1755783be1bf57335f48c41cc07e5e Mon Sep 17 00:00:00 2001 From: Jake Pullen Date: Sat, 1 Nov 2025 10:20:07 +0000 Subject: [PATCH] =?UTF-8?q?fix:=20=F0=9F=90=9BCleaned=20up=20python=20file?= =?UTF-8?q?s=20and=20moved=20site=20bounding=20boxes=20to=20config?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- batch_nimrod.py | 147 +++++++++++++++++++++++++++++++++--------------- config.yaml | 16 ++++++ nimrod_3.py | 95 ++++++++++++++++++++++++------- pyproject.toml | 1 + uv.lock | 52 ++++++++++++++++- 5 files changed, 244 insertions(+), 67 deletions(-) create mode 100644 config.yaml diff --git a/batch_nimrod.py b/batch_nimrod.py index 30be8f3..ba5728d 100644 --- a/batch_nimrod.py +++ b/batch_nimrod.py @@ -2,29 +2,33 @@ from nimrod_3 import Nimrod import os from pathlib import Path import re -import logging # TODO: Add logging +import logging +import yaml -""" -import nimrod -a = nimrod.Nimrod(open( - '200802252000_nimrod_ng_radar_rainrate_composite_1km_merged_UK_zip')) -a.query() -a.extract_asc(open('full_raster.asc', 'w')) -a.apply_bbox(279906, 285444, 283130, 290440) -a.query() -a.extract_asc(open('clipped_raster.asc', 'w')) -""" +logging.basicConfig( + level=logging.INFO, format="%(asctime)s - %(levelname)s - %(message)s" +) BOUNDING_BOX_INFO = { "BRISCS": (607000, 608000, 217000, 218000), "WINTSC": (499000, 500000, 416000, 417000), } -in_top_folder = "./dat_files" -out_top_folder = "./asc_files" + +IN_TOP_FOLDER = "./dat_files" +OUT_TOP_FOLDER = "./asc_files" +CONFIG_FILE = "config.yaml" def get_datetime(file_name: str) -> str: - # Pattern to match YYYYMMDDHHMM format + """ + Extract datetime from a filename using regex pattern matching. + + Args: + file_name (str): The name of the file to extract datetime from. + + Returns: + str: The extracted datetime in YYYYMMDDHHMM format, or 'date_not_found' if no match. + """ pattern = r"(\d{8})(\d{4})" match = re.search(pattern, file_name) if match: @@ -35,37 +39,88 @@ def get_datetime(file_name: str) -> str: return "date_not_found" -# read all file names in the folder -area_folders = os.listdir(in_top_folder) +def load_config() -> dict: + """ + Load configuration from YAML file. -for area in area_folders: - bounding_box = BOUNDING_BOX_INFO.get(area, (0, 0, 0, 0)) - print(area, bounding_box) - xmin, xmax, ymin, ymax = bounding_box - os.makedirs(Path(out_top_folder, area), exist_ok=True) - for in_file in os.listdir(Path(in_top_folder, area)): - timestamp = get_datetime(in_file) - out_file_name = f"{timestamp}_{area}.asc" - out_file_path = Path(out_top_folder, area, out_file_name) - in_file_full = Path(in_top_folder, area, in_file) - #print(in_file_full) - try: - image = Nimrod(open(in_file_full, 'rb')) - image.apply_bbox(xmin, xmax, ymin, ymax) - # image.query() # prints out file_details - with open(out_file_path, 'w') as outfile: - image.extract_asc(outfile) - except Nimrod.HeaderReadError as e: - print(f'Failed to read file {in_file_full}, is it corrupt?') - print(e) - continue - except Nimrod.PayloadReadError as e: - print(f'Failed to load the raster data in {in_file_full}') - print(e) - continue - except Nimrod.BboxRangeError as e: - print(f'Bounding Box out of range. Given bounding box: {bounding_box}') - print(e) - # Skips the whole area as bounding box will be out of bounds for all files - break + Returns: + dict: Configuration dictionary containing bounding box information. + Raises: + FileNotFoundError: If the config.yaml file is not found. + yaml.YAMLError: If there's an error parsing the YAML file. + """ + try: + with open(CONFIG_FILE, "r") as file: + config = yaml.safe_load(file) + return config.get("bounding_box_info", {}) + except FileNotFoundError: + logging.error( + f"Config file {CONFIG_FILE} not found. Using default configuration." + ) + return {} + except yaml.YAMLError as e: + logging.error(f"Error parsing YAML file: {e}") + return {} + + +def process_nimrod_files() -> None: + """ + Process all Nimrod files in the input directory, applying bounding box clipping + and exporting to ASC format. + + This function reads all files from IN_TOP_FOLDER, applies the appropriate bounding + box for each area, and exports clipped raster data to OUT_TOP_FOLDER. + """ + # Load configuration + bounding_box_info = load_config() + + # Use default if config is empty + if not bounding_box_info: + bounding_box_info = { + "BRISCS": (607000, 608000, 217000, 218000), + "WINTSC": (499000, 500000, 416000, 417000), + } + + # read all file names in the folder + area_folders = os.listdir(IN_TOP_FOLDER) + + for area in area_folders: + bounding_box = bounding_box_info.get(area, (0, 0, 0, 0)) + logging.info(f"Processing area: {area}, bounding box: {bounding_box}") + xmin, xmax, ymin, ymax = bounding_box + os.makedirs(Path(OUT_TOP_FOLDER, area), exist_ok=True) + + for in_file in os.listdir(Path(IN_TOP_FOLDER, area)): + timestamp = get_datetime(in_file) + out_file_name = f"{timestamp}_{area}.asc" + out_file_path = Path(OUT_TOP_FOLDER, area, out_file_name) + in_file_full = Path(IN_TOP_FOLDER, area, in_file) + + try: + image = Nimrod(open(in_file_full, "rb")) + image.apply_bbox(xmin, xmax, ymin, ymax) + # image.query() # prints out file_details + with open(out_file_path, "w") as outfile: + image.extract_asc(outfile) + logging.info(f"Successfully processed: {in_file_full}") + + except Nimrod.HeaderReadError as e: + logging.error(f"Failed to read file {in_file_full}, is it corrupt?") + logging.error(e) + continue + except Nimrod.PayloadReadError as e: + logging.error(f"Failed to load the raster data in {in_file_full}") + logging.error(e) + continue + except Nimrod.BboxRangeError as e: + logging.error( + f"Bounding Box out of range. Given bounding box: {bounding_box}" + ) + logging.error(e) + # Skips the whole area as bounding box will be out of bounds for all files + break + + +if __name__ == "__main__": + process_nimrod_files() diff --git a/config.yaml b/config.yaml new file mode 100644 index 0000000..bbd2ac2 --- /dev/null +++ b/config.yaml @@ -0,0 +1,16 @@ +bounding_box_info: +# SITE_NAME: +# - XMIN +# - XMAX +# - YMIN +# - YMAX + BRISCS: + - 607000 + - 608000 + - 217000 + - 218000 + WINTSC: + - 499000 + - 500000 + - 416000 + - 417000 \ No newline at end of file diff --git a/nimrod_3.py b/nimrod_3.py index 574f0fc..1672259 100644 --- a/nimrod_3.py +++ b/nimrod_3.py @@ -67,17 +67,48 @@ import sys import struct import array import argparse +from typing import IO class Nimrod: - """Reading, querying and processing of NIMROD format rainfall data files.""" + """ + Reading, querying and processing of NIMROD format rainfall data files. + + This class provides functionality to parse NIMROD format files, display + header information, and extract raster data to ESRI ASCII format files. + + Attributes: + hdr_element (List): List of all header elements indexed by element number + nrows (int): Number of rows in the raster image + ncols (int): Number of columns in the raster image + n_data_specific_reals (int): Number of data-specific real header entries + n_data_specific_ints (int): Number of data-specific integer header entries + y_top (float): Top northing coordinate + y_pixel_size (float): Size of pixel in y-direction + x_left (float): Left easting coordinate + x_pixel_size (float): Size of pixel in x-direction + x_right (float): Right easting coordinate + y_bottom (float): Bottom northing coordinate + data (array.array): Raster data array + """ class RecordLenError(Exception): """ Exception Type: NIMROD record length read from file not as expected. + + Attributes: + message (str): Error message describing the problem """ - def __init__(self, actual, expected, location): + def __init__(self, actual: int, expected: int, location: str) -> None: + """ + Initialize the RecordLenError with details about the error. + + Args: + actual (int): Actual record length read from file + expected (int): Expected record length + location (str): Description of position in file where error occurred + """ self.message = "Incorrect record length %d bytes (expected %d) at %s." % ( actual, expected, @@ -85,43 +116,57 @@ class Nimrod: ) class HeaderReadError(Exception): - """Exception Type: Read error whilst parsing NIMROD header elements.""" + """ + Exception Type: Read error whilst parsing NIMROD header elements. + + This exception is raised when there are issues reading the header data + from a NIMROD file. + """ pass class PayloadReadError(Exception): - """Exception Type: Read error whilst parsing NIMROD raster data.""" + """ + Exception Type: Read error whilst parsing NIMROD raster data. + + This exception is raised when there are issues reading the raster data + payload from a NIMROD file. + """ pass class BboxRangeError(Exception): """ Exception Type: Bounding box specified out of range of raster image. + + This exception is raised when a bounding box is specified that does not + intersect with the raster image data. """ pass - def __init__(self, infile): + def __init__(self, infile: IO[bytes]) -> None: """ Parse all header and data info from a NIMROD data file into this object. - (This method based on read_nimrod.py by Charles Kilburn Aug 2008) Args: - infile: NIMROD file object opened for binary reading + infile (IO[bytes]): NIMROD file object opened for binary reading + Raises: RecordLenError: NIMROD record length read from file not as expected HeaderReadError: Read error whilst parsing NIMROD header elements PayloadReadError: Read error whilst parsing NIMROD raster data """ - def check_record_len(infile, expected, location): + def check_record_len(infile: IO[bytes], expected: int, location: str) -> None: """ Check record length in C struct is as expected. Args: - infile: file to read from - expected: expected value of record length read - location: description of position in file (for reporting) + infile (IO[bytes]): file to read from + expected (int): expected value of record length read + location (str): description of position in file (for reporting) + Raises: HeaderReadError: Read error whilst reading record length RecordLenError: Unexpected NIMROD record length read from file @@ -220,8 +265,14 @@ class Nimrod: check_record_len(infile, array_size * 2, "data end") infile.close() - def query(self): - """Print complete NIMROD file header information.""" + def query(self) -> None: + """ + Print complete NIMROD file header information. + + This method displays all header information from the parsed NIMROD file + in a formatted manner including general headers, data-specific headers, + and character headers along with validity time and coordinate ranges. + """ print("NIMROD file raw header fields listed by element number:") print("General (Integer) header entries:") @@ -273,7 +324,7 @@ class Nimrod: ) print("Image size: %d rows x %d cols" % (self.nrows, self.ncols)) - def apply_bbox(self, xmin, xmax, ymin, ymax): + def apply_bbox(self, xmin: float, xmax: float, ymin: float, ymax: float) -> None: """ Clip raster data to all pixels that intersect specified bounding box. @@ -283,10 +334,11 @@ class Nimrod: width of the raster edge will intersect with the pixel. Args: - xmin: Most negative easting or longitude of bounding box - xmax: Most positive easting or longitude of bounding box - ymin: Most negative northing or latitude of bounding box - ymax: Most positive northing or latitude of bounding box + xmin (float): Most negative easting or longitude of bounding box + xmax (float): Most positive easting or longitude of bounding box + ymin (float): Most negative northing or latitude of bounding box + ymax (float): Most positive northing or latitude of bounding box + Raises: BboxRangeError: Bounding box specified out of range of raster image """ @@ -337,12 +389,15 @@ class Nimrod: self.hdr_element[34] = self.y_top self.hdr_element[36] = self.x_left - def extract_asc(self, outfile): + def extract_asc(self, outfile: IO[str]) -> None: """ Write raster data to an ESRI ASCII (.asc) format file. Args: - outfile: file object opened for writing text + outfile (IO[str]): file object opened for writing text + + Raises: + ValueError: If x_pixel_size != y_pixel_size (non-square pixels) """ # As ESRI ASCII format only supports square pixels, warn if not so diff --git a/pyproject.toml b/pyproject.toml index 753660f..9b1c6e6 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -5,5 +5,6 @@ description = "Add your description here" readme = "README.md" requires-python = ">=3.12" dependencies = [ + "pyyaml>=6.0.3", "ruff>=0.14.3", ] diff --git a/uv.lock b/uv.lock index fd5045f..d3e42b1 100644 --- a/uv.lock +++ b/uv.lock @@ -7,11 +7,61 @@ name = "met-office" version = "0.1.0" source = { virtual = "." } dependencies = [ + { name = "pyyaml" }, { name = "ruff" }, ] [package.metadata] -requires-dist = [{ name = "ruff", specifier = ">=0.14.3" }] +requires-dist = [ + { name = "pyyaml", specifier = ">=6.0.3" }, + { name = "ruff", specifier = ">=0.14.3" }, +] + +[[package]] +name = "pyyaml" 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