fix: 🐛Cleaned up python files and moved site bounding boxes to config

batch_nimrod.py

@@ -2,29 +2,33 @@ from nimrod_3 import Nimrod
 import os
 from pathlib import Path
 import re
-import logging # TODO: Add logging
+import logging
+import yaml
 
-"""
+logging.basicConfig(
-import nimrod  
+    level=logging.INFO, format="%(asctime)s - %(levelname)s - %(message)s"
-a = nimrod.Nimrod(open(  
+)
-    '200802252000_nimrod_ng_radar_rainrate_composite_1km_merged_UK_zip'))  
-a.query()  
-a.extract_asc(open('full_raster.asc', 'w'))  
-a.apply_bbox(279906, 285444, 283130, 290440)  
-a.query()  
-a.extract_asc(open('clipped_raster.asc', 'w'))  
-"""
 
 BOUNDING_BOX_INFO = {
     "BRISCS": (607000, 608000, 217000, 218000),
     "WINTSC": (499000, 500000, 416000, 417000),
 }
-in_top_folder = "./dat_files"
+
-out_top_folder = "./asc_files"
+IN_TOP_FOLDER = "./dat_files"
+OUT_TOP_FOLDER = "./asc_files"
+CONFIG_FILE = "config.yaml"
 
 
 def get_datetime(file_name: str) -> str:
-    # Pattern to match YYYYMMDDHHMM format
+    """
+    Extract datetime from a filename using regex pattern matching.
+
+    Args:
+        file_name (str): The name of the file to extract datetime from.
+
+    Returns:
+        str: The extracted datetime in YYYYMMDDHHMM format, or 'date_not_found' if no match.
+    """
     pattern = r"(\d{8})(\d{4})"
     match = re.search(pattern, file_name)
     if match:
@@ -35,37 +39,88 @@ def get_datetime(file_name: str) -> str:
         return "date_not_found"
 
 
-# read all file names in the folder
+def load_config() -> dict:
-area_folders = os.listdir(in_top_folder)
+    """
+    Load configuration from YAML file.
 
-for area in area_folders:
+    Returns:
-    bounding_box = BOUNDING_BOX_INFO.get(area, (0, 0, 0, 0))
+        dict: Configuration dictionary containing bounding box information.
-    print(area, bounding_box)
+
+    Raises:
+        FileNotFoundError: If the config.yaml file is not found.
+        yaml.YAMLError: If there's an error parsing the YAML file.
+    """
+    try:
+        with open(CONFIG_FILE, "r") as file:
+            config = yaml.safe_load(file)
+            return config.get("bounding_box_info", {})
+    except FileNotFoundError:
+        logging.error(
+            f"Config file {CONFIG_FILE} not found. Using default configuration."
+        )
+        return {}
+    except yaml.YAMLError as e:
+        logging.error(f"Error parsing YAML file: {e}")
+        return {}
+
+
+def process_nimrod_files() -> None:
+    """
+    Process all Nimrod files in the input directory, applying bounding box clipping
+    and exporting to ASC format.
+
+    This function reads all files from IN_TOP_FOLDER, applies the appropriate bounding
+    box for each area, and exports clipped raster data to OUT_TOP_FOLDER.
+    """
+    # Load configuration
+    bounding_box_info = load_config()
+
+    # Use default if config is empty
+    if not bounding_box_info:
+        bounding_box_info = {
+            "BRISCS": (607000, 608000, 217000, 218000),
+            "WINTSC": (499000, 500000, 416000, 417000),
+        }
+
+    # read all file names in the folder
+    area_folders = os.listdir(IN_TOP_FOLDER)
+
+    for area in area_folders:
+        bounding_box = bounding_box_info.get(area, (0, 0, 0, 0))
+        logging.info(f"Processing area: {area}, bounding box: {bounding_box}")
         xmin, xmax, ymin, ymax = bounding_box
-    os.makedirs(Path(out_top_folder, area), exist_ok=True)
+        os.makedirs(Path(OUT_TOP_FOLDER, area), exist_ok=True)
-    for in_file in os.listdir(Path(in_top_folder, area)):
+
+        for in_file in os.listdir(Path(IN_TOP_FOLDER, area)):
             timestamp = get_datetime(in_file)
             out_file_name = f"{timestamp}_{area}.asc"
-        out_file_path = Path(out_top_folder, area, out_file_name)
+            out_file_path = Path(OUT_TOP_FOLDER, area, out_file_name)
-        in_file_full = Path(in_top_folder, area, in_file)
+            in_file_full = Path(IN_TOP_FOLDER, area, in_file)
-        #print(in_file_full)
+
             try:
-            image = Nimrod(open(in_file_full, 'rb'))
+                image = Nimrod(open(in_file_full, "rb"))
                 image.apply_bbox(xmin, xmax, ymin, ymax)
                 # image.query() # prints out file_details
-            with open(out_file_path, 'w') as outfile:
+                with open(out_file_path, "w") as outfile:
                     image.extract_asc(outfile)
+                logging.info(f"Successfully processed: {in_file_full}")
+
             except Nimrod.HeaderReadError as e:
-            print(f'Failed to read file {in_file_full}, is it corrupt?')
+                logging.error(f"Failed to read file {in_file_full}, is it corrupt?")
-            print(e)
+                logging.error(e)
                 continue
             except Nimrod.PayloadReadError as e:
-            print(f'Failed to load the raster data in {in_file_full}')
+                logging.error(f"Failed to load the raster data in {in_file_full}")
-            print(e)
+                logging.error(e)
                 continue
             except Nimrod.BboxRangeError as e:
-            print(f'Bounding Box out of range. Given bounding box: {bounding_box}')
+                logging.error(
-            print(e)
+                    f"Bounding Box out of range. Given bounding box: {bounding_box}"
+                )
+                logging.error(e)
                 # Skips the whole area as bounding box will be out of bounds for all files
                 break
 
+
+if __name__ == "__main__":
+    process_nimrod_files()

config.yaml

@@ -0,0 +1,16 @@
+bounding_box_info:
+# SITE_NAME:
+#   - XMIN 
+#   - XMAX
+#   - YMIN
+#   - YMAX
+  BRISCS:
+    - 607000
+    - 608000
+    - 217000
+    - 218000
+  WINTSC:
+    - 499000
+    - 500000
+    - 416000
+    - 417000

nimrod_3.py

@@ -67,17 +67,48 @@ import sys
 import struct
 import array
 import argparse
+from typing import IO
 
 
 class Nimrod:
-    """Reading, querying and processing of NIMROD format rainfall data files."""
+    """
+    Reading, querying and processing of NIMROD format rainfall data files.
+
+    This class provides functionality to parse NIMROD format files, display
+    header information, and extract raster data to ESRI ASCII format files.
+
+    Attributes:
+        hdr_element (List): List of all header elements indexed by element number
+        nrows (int): Number of rows in the raster image
+        ncols (int): Number of columns in the raster image
+        n_data_specific_reals (int): Number of data-specific real header entries
+        n_data_specific_ints (int): Number of data-specific integer header entries
+        y_top (float): Top northing coordinate
+        y_pixel_size (float): Size of pixel in y-direction
+        x_left (float): Left easting coordinate
+        x_pixel_size (float): Size of pixel in x-direction
+        x_right (float): Right easting coordinate
+        y_bottom (float): Bottom northing coordinate
+        data (array.array): Raster data array
+    """
 
     class RecordLenError(Exception):
         """
         Exception Type: NIMROD record length read from file not as expected.
+
+        Attributes:
+            message (str): Error message describing the problem
         """
 
-        def __init__(self, actual, expected, location):
+        def __init__(self, actual: int, expected: int, location: str) -> None:
+            """
+            Initialize the RecordLenError with details about the error.
+
+            Args:
+                actual (int): Actual record length read from file
+                expected (int): Expected record length
+                location (str): Description of position in file where error occurred
+            """
             self.message = "Incorrect record length %d bytes (expected %d) at %s." % (
                 actual,
                 expected,
@@ -85,43 +116,57 @@ class Nimrod:
             )
 
     class HeaderReadError(Exception):
-        """Exception Type: Read error whilst parsing NIMROD header elements."""
+        """
+        Exception Type: Read error whilst parsing NIMROD header elements.
+
+        This exception is raised when there are issues reading the header data
+        from a NIMROD file.
+        """
 
         pass
 
     class PayloadReadError(Exception):
-        """Exception Type: Read error whilst parsing NIMROD raster data."""
+        """
+        Exception Type: Read error whilst parsing NIMROD raster data.
+
+        This exception is raised when there are issues reading the raster data
+        payload from a NIMROD file.
+        """
 
         pass
 
     class BboxRangeError(Exception):
         """
         Exception Type: Bounding box specified out of range of raster image.
+
+        This exception is raised when a bounding box is specified that does not
+        intersect with the raster image data.
         """
 
         pass
 
-    def __init__(self, infile):
+    def __init__(self, infile: IO[bytes]) -> None:
         """
         Parse all header and data info from a NIMROD data file into this object.
-        (This method based on read_nimrod.py by Charles Kilburn Aug 2008)
 
         Args:
-            infile: NIMROD file object opened for binary reading
+            infile (IO[bytes]): NIMROD file object opened for binary reading
+
         Raises:
             RecordLenError: NIMROD record length read from file not as expected
             HeaderReadError: Read error whilst parsing NIMROD header elements
             PayloadReadError: Read error whilst parsing NIMROD raster data
         """
 
-        def check_record_len(infile, expected, location):
+        def check_record_len(infile: IO[bytes], expected: int, location: str) -> None:
             """
             Check record length in C struct is as expected.
 
             Args:
-                infile: file to read from
+                infile (IO[bytes]): file to read from
-                expected: expected value of record length read
+                expected (int): expected value of record length read
-                location: description of position in file (for reporting)
+                location (str): description of position in file (for reporting)
+
             Raises:
                 HeaderReadError: Read error whilst reading record length
                 RecordLenError: Unexpected NIMROD record length read from file
@@ -220,8 +265,14 @@ class Nimrod:
         check_record_len(infile, array_size * 2, "data end")
         infile.close()
 
-    def query(self):
+    def query(self) -> None:
-        """Print complete NIMROD file header information."""
+        """
+        Print complete NIMROD file header information.
+
+        This method displays all header information from the parsed NIMROD file
+        in a formatted manner including general headers, data-specific headers,
+        and character headers along with validity time and coordinate ranges.
+        """
 
         print("NIMROD file raw header fields listed by element number:")
         print("General (Integer) header entries:")
@@ -273,7 +324,7 @@ class Nimrod:
         )
         print("Image size: %d rows x %d cols" % (self.nrows, self.ncols))
 
-    def apply_bbox(self, xmin, xmax, ymin, ymax):
+    def apply_bbox(self, xmin: float, xmax: float, ymin: float, ymax: float) -> None:
         """
         Clip raster data to all pixels that intersect specified bounding box.
 
@@ -283,10 +334,11 @@ class Nimrod:
         width of the raster edge will intersect with the pixel.
 
         Args:
-            xmin: Most negative easting or longitude of bounding box
+            xmin (float): Most negative easting or longitude of bounding box
-            xmax: Most positive easting or longitude of bounding box
+            xmax (float): Most positive easting or longitude of bounding box
-            ymin: Most negative northing or latitude of bounding box
+            ymin (float): Most negative northing or latitude of bounding box
-            ymax: Most positive northing or latitude of bounding box
+            ymax (float): Most positive northing or latitude of bounding box
+
         Raises:
             BboxRangeError: Bounding box specified out of range of raster image
         """
@@ -337,12 +389,15 @@ class Nimrod:
         self.hdr_element[34] = self.y_top
         self.hdr_element[36] = self.x_left
 
-    def extract_asc(self, outfile):
+    def extract_asc(self, outfile: IO[str]) -> None:
         """
         Write raster data to an ESRI ASCII (.asc) format file.
 
         Args:
-            outfile: file object opened for writing text
+            outfile (IO[str]): file object opened for writing text
+
+        Raises:
+            ValueError: If x_pixel_size != y_pixel_size (non-square pixels)
         """
 
         # As ESRI ASCII format only supports square pixels, warn if not so

pyproject.toml

@@ -5,5 +5,6 @@ description = "Add your description here"
 readme = "README.md"
 requires-python = ">=3.12"
 dependencies = [
+    "pyyaml>=6.0.3",
     "ruff>=0.14.3",
 ]

uv.lock

@@ -7,11 +7,61 @@ name = "met-office"
 version = "0.1.0"
 source = { virtual = "." }
 dependencies = [
+    { name = "pyyaml" },
     { name = "ruff" },
 ]
 
 [package.metadata]
-requires-dist = [{ name = "ruff", specifier = ">=0.14.3" }]
+requires-dist = [
+    { name = "pyyaml", specifier = ">=6.0.3" },
+    { name = "ruff", specifier = ">=0.14.3" },
+]
+
+[[package]]
+name = "pyyaml"
+version = "6.0.3"
+source = { registry = "https://pypi.org/simple" }
+sdist = { url = "https://files.pythonhosted.org/packages/05/8e/961c0007c59b8dd7729d542c61a4d537767a59645b82a0b521206e1e25c2/pyyaml-6.0.3.tar.gz", hash = "sha256:d76623373421df22fb4cf8817020cbb7ef15c725b9d5e45f17e189bfc384190f", size = 130960, upload-time = "2025-09-25T21:33:16.546Z" }
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